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Life sciences · Preprint
arXiv · October 22, 2026
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Transformer-based models have shown strong performance across diverse tasks, but their reliance on self-attention mechanisms often leads to high computational costs. Token sparsification, which reduces the number of tokens processed in transformer layers, offers a promising solution to maintain performance while improving efficiency. However, although widely studied in the vision and language domains, token sparsification remains underexplored in audio, with existing work often limited to a single method, model size, or dataset. This work presents a comprehensive evaluation of token sparsification techniques for audio transformers. We assess a range of token pruning and merging strategies across multiple datasets and model sizes, under both post-training and fine-tuning settings. Furthermore, we introduce a novel sparsification approach that combines attention scores with spectral cues derived from the frequency content of token embeddings. Our experiments show that frequency-aware approaches, particularly those based on spectral flatness and low-frequency energy, consistently outperform attention-only methods. We also find that sparsification based on spectrogram patch intensity is especially effective for longer audio inputs. These results highlight the value of incorporating frequency-domain and input-specific information into sparsification strategies to enhance performance in audio tasks.