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Life sciences · Preprint
arXiv · November 3, 2026
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Importance sampling is a building block of modern statistical computing, but the weighted estimate is prone to high or infinite variance. Moreover, its empirical standard error is often unreliable, leaving importance sampling without practical uncertainty quantification. Motivated by multilevel regression and poststratification (MRP) in survey sampling, we propose post-stratified importance sampling (PIS) for estimating target expectations from proposal draws. PIS reformulates arbitrarily high-dimensional weighting into two one-dimensional probabilistic modeling problems: regression for the conditional mean given the importance ratio and marginal density estimation for the importance ratio. Different modeling choices yield a family of PIS estimators, encompassing ordinary importance sampling as a special case. We develop a model-based implementation that combines one-dimensional Gaussian process regression for the conditional mean and score-informed heavy-tailed density estimation for the marginal law, using both the observed weights and the available density evaluations. We study the oracle gains of PIS and establish consistency under general and model-specific conditions. Simulations and applications to cross-validation demonstrate improvements in estimation accuracy and uncertainty quantification.