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Life sciences · Preprint
arXiv · October 1, 2026
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Mechanistic interpretability aims to recover the internal computations responsible for model behavior. Progress in automated circuit discovery is often framed as a search problem: better attribution or optimization should identify better mechanisms. This assumes that the evaluation objective can recognize a better circuit once it is found. We show that intervention-defined faithfulness can instead prefer an equally sized circuit that reproduces the model's behavior less well, creating an objective-level recovery gap. Across four human-reference tasks and InterpBench, we compare validation faithfulness with behavior on held-out prompts under fixed ordinary resampling. The behavioral criterion is agreement with the intact model, including its mistakes, except on Greater-Than, where we use semantic accuracy. Controlled reference edits reveal misranking without any discovery algorithm, and outputs of EAP, EAP-IG, ACDC, and Edge-SP exhibit the same failure. Under resampling, KL misranks 9.4%-41.2% of candidate pairs across these methods on the human-reference tasks. We investigate context distortion as an explanation: replacing excluded signals changes the inputs on which retained components operate. Restoring selected signals from the recipient's intact-model execution repairs 96 of 100 persistent KL misrankings from the discovery pool on both validation and held-out prompts. The circuits and their original behavioral scores remain unchanged. These findings show why better discovery alone is insufficient when its objective rewards the wrong candidate.