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Life sciences · Preprint
arXiv · October 23, 2026
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Self-supervised Vision Transformers (ViTs) like DINO encode rich semantics, enabling training-free segmentation of objects from the background and discovery of their parts via feature clustering. This paper focuses on part discovery: partitioning a foreground object into semantic parts. Existing approaches produce imprecise part boundaries. We trace this to the rigid ViT patch grid used in training DINO, where patches straddling boundaries contain pixels from multiple parts. While DINO's invariance-based training could absorb this pixel-level mixing into clean features, experiments with over 26K foreground patches show it does not: boundary-overlapping patches produce features with higher entropy and lower assignment confidence, blurring predicted part boundaries. Rather than make the massive effort of retraining DINO over geometrically coherent regions, an easier approach is to take boundaries directly from a boundary detector, which supplies the geometric information DINO's features lack. Motivated by this, we introduce Part-DINO, a training-free framework that combines boundaries from low-level image segmentation with DINO's semantic features. We use the boundaries to partition the image into regions, pool DINO features within each region, and group them to discover parts. Without any training, Part-DINO produces structurally coherent part assignments, outperforming training-free baselines across four standard benchmarks (CUB, CelebA, PartImageNet-OOD, PartImageNet-Seg) and remaining competitive with weakly-supervised and unsupervised methods.