Life sciences · Preprint
arXiv · September 16, 2026
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We consider the problem of estimating the trace of an implicit matrix $\mathbf{A} \in \mathbb{R}^{d^p\times d^p}$ that can only be accessed through matrix-vector products queries. The \textit{Hutchinson trace estimator}% ~\cite{Girard1987algorithme, article-hutchinson} is a classical sketching method for this problem. Their estimator, $H_{m}(\mathbf{A}) = \frac{1}{m} \sum_{i=1}^{m} {\mathbf{z}^{(i)}}^T \mathbf{A} \mathbf{z}^{(i)}, \quad \text{where } \ {\mathbf{z}^{(i)}}\in \mathbb{R}^{d^p}$, and $z^{(i)}_j \in {N}(0, 1), j\in [d^p]$, satisfies the following guarantees: (i) $\mathbb{E}[H_{m}(\mathbf{A})]=\operatorname{tr}(\mathbf{A})$, and (ii) $\mathrm{Var}[H_{m}(\mathbf{A})]=\frac{2}{m}||\mathbf{A}||_F^2$. Generating one query vector $\mathbf{z}^{(i)}$ requires $O(d^p)$ random bits; thus, $m$ queries require $O(md^p)$ random bits, which can be prohibitive in large-scale applications. Recent work by Meyer et al.~\cite{meyer2025hutchinsonsestimatorbadkroneckertraceestimation} proposes a variant of the Hutchinson trace estimator in which each query vector in $\mathbb{R}^{d^p}$ is constructed as the Kronecker product of $p$ random vectors in $\mathbb{R}^d$, requiring $O(mpd)$ random bits for $m$ query vectors. The estimator of~\cite{meyer2025hutchinsonsestimatorbadkroneckertraceestimation} is unbiased; however, its variance grows exponentially with $p$. In this work, we address this limitation by proposing a sketching-based estimator that requires $O\!\big(p (d + m)\log m\big)$ random bits, yields an unbiased estimate of the trace, and simultaneously achieves a variance bound that grows polynomially with $p$.