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Life sciences · Preprint
arXiv · September 16, 2026
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Formal explainability provides mathematically grounded justifications for individual predictions. However, abductive explanations often exceed human cognitive limits by involving too many features, while probabilistic relaxations have remained largely limited to categorical classification. We present a unified framework for probabilistic explainability based on sparse, anchored linear models, applicable to both binary classification and continuous regression. By mapping instances to the Boolean hypercube, our linear explanations strictly generalize subset-based approaches: they capture both the magnitude and direction of feature contributions while enforcing a prescribed sparsity budget $k$. We show that minimizing the relevance error for such explanations is \ClassNPPP-hard when the underlying model is a neural network, and we relate this intractable objective to a tractable surrogate---the fidelity error. For a parameterized family of local distributions, the relevance error of any $k$-sparse explanation is bounded by its fidelity error up to a multiplicative factor that remains small locally. We address the resulting empirical problem using two complementary approaches: a Mixed Integer Programming (MIP) formulation that yields provably optimal empirical solutions while maintaining polynomial sample complexity, and a polynomial-time Iterative Hard Thresholding (IHT) algorithm with provable approximation guarantees. Empirical evaluations show that, unlike state-of-the-art baselines such as LIME and MAPLE, our explanations satisfy both the anchoring and sparsity constraints by construction, while consistently achieving lower relevance error.