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Life sciences · Preprint
arXiv · September 25, 2026
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Transformers have become a central architecture for in-context learning (ICL), particularly through their state-of-the-art performance in large language models. This success motivates understanding how transformers exploit task-relevant structure in geometrically heterogeneous data. However, existing nonparametric ICL theory has largely focused on Euclidean domains or single-manifold models. To address this gap, we study the prediction problem under unknown local geometry, modeled by sample size-dependent mixtures of manifolds with heterogeneous dimensions, smoothness, and sampling masses. Under local separation and small-perturbation conditions, we establish a minimax lower bound capturing the aggregate difficulty of the components and construct an oracle tangent local-polynomial estimator with a matching upper bound. This estimator is connected to a structure-informed, two-stage softmax transformer with a geometric preconditioner and chartwise reduced local-polynomial solvers. The transformer achieves negligible approximation error relative to the minimax rate with logarithmic depth and polynomial size. Finally, we derive an in-context generalization bound for near empirical risk minimizers over this class. Together, these results identify conditions under which the resulting predictor exploits local geometry and attains the aggregate minimax rate.