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Life sciences · Preprint
arXiv · October 23, 2026
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Large Language Models (LLMs) have been widely adopted in text classification tasks, where they not only output class predictions but also generate explanations that highlight the tokens deemed most relevant for reaching the predicted label. Yet it remains unclear whether these highlighted elements are behaviorally consistent with the model's own predictions under targeted interventions, which we refer to as functional auto-consistency. While much of the literature evaluates the textual plausibility of such explanations, few studies assess their functional consistency with the model's actual behavior. In this work, we propose an experimental framework based on the principle of auto-consistency: if a model identifies certain tokens as decisive, then isolating, removing, or semantically inverting them should produce systematic and interpretable changes in its predictions. We operationalize this evaluation through sufficiency, comprehensiveness, and counterfactuality metrics, and conduct experiments on IMDB and Steam reviews across both closed-source (GPT-4o-mini) and open-source LLMs (Gemma3, Granite8B, DeepSeek). Results show that GPT-4o-mini follows the expected progression across all metrics, Gemma3 and Granite8B maintain coherence under sufficiency but lose consistency under more demanding interventions, while DeepSeek variants display structural deviations, either failing to preserve sufficiency or overreacting under comprehensiveness and counterfactuality. These findings show that explanation reliability varies across LLM families and scales, with smaller models displaying contradictions and larger ones exhibiting over-sensitivity. By combining sufficiency, comprehensiveness, and counterfactuality, our approach provides a systematic methodology for assessing the functional consistency of LLM self-explanations.